STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8655KEGG: tde:TDE0502 ankyrin repeat-containing protein. (350 aa)    
Predicted Functional Partners:
Caci_6575
KEGG: sma:SAV_1400 hypothetical protein.
  
 0.869
Caci_2672
KEGG: sco:SCO4821 hypothetical protein.
    
 0.816
Caci_7002
PFAM: Acyl transferase; KR domain protein; Beta- ketoacyl synthase; Erythronolide synthase docking; short- chain dehydrogenase/reductase SDR; phosphopantetheine- binding; KEGG: stp:Strop_2768 beta-ketoacyl synthase.
  
 0.802
Caci_7000
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: hau:Haur_3965 beta-ketoacyl synthase.
   
 0.774
Caci_1680
PFAM: Cytochrome b/b6 domain; KEGG: sco:SCO2148 cytochrome b subunit.
    
 0.732
Caci_8656
Hypothetical protein.
       0.705
Caci_2213
KEGG: sen:SACE_6203 ATP-dependent helicase; TIGRFAM: ATP-dependent helicase HrpA; PFAM: helicase-associated domain protein; protein of unknown function DUF1605; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; AAA ATPase.
    
 0.676
Caci_6512
KEGG: sma:SAV_6231 ATP-dependent RNA helicase; TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase-associated domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein.
    
 0.676
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
 
 0.669
Caci_3841
PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS; Xanthine/uracil/vitamin C permease; KEGG: mxa:MXAN_6505 sulfate permease.
    
 
 0.628
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.