Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Caci_4121 | Caci_8664 | PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01348 major facilitator superfamily multidrug resistance protein. | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | 0.498 |
Caci_8664 | Caci_4121 | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro01348 major facilitator superfamily multidrug resistance protein. | 0.498 |
Caci_8664 | Caci_8665 | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein. | 0.546 |
Caci_8664 | Caci_8666 | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor. | 0.475 |
Caci_8665 | Caci_8664 | PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein. | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | 0.546 |
Caci_8665 | Caci_8666 | PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein. | Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor. | 0.948 |
Caci_8666 | Caci_8664 | Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor. | PFAM: major facilitator superfamily MFS_1; KEGG: saq:Sare_0078 major facilitator transporter. | 0.475 |
Caci_8666 | Caci_8665 | Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sgr:SGR_628 RNA polymerase ECF-subfamily sigma factor. | PFAM: YCII-related; KEGG: fre:Franean1_6623 DGPFAETKE family protein. | 0.948 |