STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8726PFAM: polysaccharide deacetylase; KEGG: cdi:DIP0225 putative secreted polysaccharide deacetylase. (307 aa)    
Predicted Functional Partners:
Caci_4941
PFAM: glycoside hydrolase family 11; Ricin B lectin; SMART: Ricin B lectin; KEGG: sco:SCO2292 secreted endo-1,4-beta-xylanase B (xylanase B); Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
      0.745
Caci_0462
Endo-1,4-beta-xylanase; KEGG: tfu:Tfu_1213 xylanase; PFAM: glycoside hydrolase family 11; SMART: cellulose-binding family II; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
      0.700
Caci_8725
PFAM: protein of unknown function DUF1212; KEGG: sgr:SGR_4082 hypothetical protein.
       0.538
Caci_6271
PFAM: glycosyl transferase family 2; KEGG: mkm:Mkms_4650 glycosyl transferase, family 2.
  
 0.480
Caci_0474
PFAM: glycoside hydrolase family 11; Ig family protein; cellulose-binding family II; SMART: cellulose-binding family II; Dystroglycan- type cadherin domain protein; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
    
 0.412
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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