STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8742PFAM: isochorismatase hydrolase; KEGG: mav:MAV_1602 isochorismatase family protein. (235 aa)    
Predicted Functional Partners:
Caci_2288
PFAM: amidohydrolase 2; KEGG: sma:SAV_6443 amidohydrolase.
 
     0.650
Caci_8743
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sma:SAV_3839 acyl-CoA dehydrogenase.
 
    0.646
Caci_2289
PFAM: amidohydrolase 2; KEGG: sma:SAV_6444 amidohydrolase.
  
     0.627
Caci_6450
PFAM: isochorismatase hydrolase; KEGG: fre:Franean1_0676 isochorismatase hydrolase.
  
     0.617
Caci_8748
KEGG: sgr:SGR_3052 putative cyclase.
 
   
 0.615
Caci_8744
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sgr:SGR_3054 putative acyl-CoA dehydrogenase.
  
    0.577
Caci_5128
PFAM: isochorismatase hydrolase; KEGG: mlo:mlr4509 hypothetical protein.
  
     0.559
Caci_6446
PFAM: isochorismatase hydrolase; KEGG: fre:Franean1_0732 isochorismatase hydrolase.
  
     0.552
Caci_4541
PFAM: isochorismatase hydrolase; KEGG: sco:SCO7455 isochorismatase.
  
     0.548
Caci_3219
KEGG: mxa:MXAN_6381 hypothetical protein.
  
    0.536
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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