STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8771TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: mab:MAB_0560 hypothetical protein. (547 aa)    
Predicted Functional Partners:
Caci_8772
Hypothetical protein; KEGG: bxe:Bxe_A1060 molybdopterin-guanine dinucleotide biosynthesis protein A.
       0.773
Caci_2100
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sgr:SGR_4488 putative transcriptional regulator.
 
   
0.535
Caci_8773
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sgr:SGR_4254 putative short chain dehydrogenase.
       0.527
Caci_9044
PFAM: cell wall hydrolase/autolysin; Peptidoglycan- binding domain 1 protein; SMART: cell wall hydrolase/autolysin; KEGG: saq:Sare_5099 cell wall hydrolase/autolysin.
  
   
 0.524
Caci_6115
KEGG: mab:MAB_0096 hypothetical protein.
  
     0.521
Caci_5433
KEGG: nfa:nfa5720 hypothetical protein.
  
     0.520
Caci_2198
KEGG: sma:SAV_3913 hypothetical protein.
  
     0.517
Caci_1021
KEGG: sco:SCO4784 hypothetical protein.
  
     0.501
Caci_5425
PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: kra:Krad_3146 thiamin pyrophosphokinase catalytic region.
   
    0.470
Caci_3685
KEGG: mgi:Mflv_0993 hypothetical protein.
  
     0.464
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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