STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8885PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sen:SACE_7194 ABC transporter ATP-binding protein. (281 aa)    
Predicted Functional Partners:
Caci_8886
KEGG: sen:SACE_7193 hypothetical protein.
 
 
 0.959
Caci_8884
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sgr:SGR_3939 GntR family transcriptional regulator.
 
  
 0.894
Caci_8883
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: aau:AAur_2040 NADP-dependent alcohol dehydrogenase.
   
   0.547
Caci_1545
PFAM: ABC transporter related; KEGG: sma:SAV_2613 ABC transporter ATP-binding protein.
  
     0.528
Caci_4211
KEGG: sco:SCO3729 regulatory protein.
  
     0.495
Caci_8882
KEGG: cms:CMS_2692 hypothetical protein.
       0.485
Caci_4242
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: sma:SAV_7501 ABC transporter ATP-binding membrane translocator, AmfB.
  
  0.484
Caci_4243
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_7500 ABC transporter ATP-binding protein, AmfA.
  
  0.466
Caci_0493
Hypothetical protein; KEGG: fre:Franean1_5724 ATP/GTP-binding protein.
  
     0.458
Caci_3756
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: saq:Sare_4186 ABC transporter related.
  
  0.434
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.