STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8909PFAM: NUDIX hydrolase; KEGG: sgr:SGR_3335 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Caci_8910
PFAM: beta-lactamase domain protein; KEGG: sma:SAV_4590 hydrolase.
     0.992
Caci_8904
PFAM: Anion-transporting ATPase; KEGG: sma:SAV_4585 ion-transporting ATPase.
 
   
 0.758
Caci_8905
PFAM: Anion-transporting ATPase; KEGG: sgr:SGR_3338 putative anion-transporting ATPase.
 
   
 0.734
Caci_8908
PFAM: Endoribonuclease L-PSP; KEGG: ace:Acel_1999 endoribonuclease L-PSP.
  
    0.699
Caci_8907
KEGG: sgr:SGR_3337 hypothetical protein.
       0.687
Caci_7816
PFAM: regulatory protein TetR; KEGG: sgr:SGR_2355 TetR family transcriptional regulator.
  
     0.559
Caci_8223
KEGG: sco:SCO4205 hypothetical protein.
  
    0.536
Caci_8906
PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: sen:SACE_5901 serine/threonine protein kinase.
       0.513
Caci_8337
PFAM: NAD-dependent epimerase/dehydratase; KEGG: fra:Francci3_0479 NAD-dependent epimerase/dehydratase.
 
    0.454
Caci_8861
PFAM: NUDIX hydrolase; KEGG: sma:SAV_4594 hypothetical protein.
  
   
 0.414
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.