STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8933KEGG: saq:Sare_3239 hypothetical protein. (197 aa)    
Predicted Functional Partners:
Caci_8935
KEGG: saq:Sare_4646 hypothetical protein.
 
     0.853
Caci_8934
KEGG: stp:Strop_4199 hypothetical protein.
       0.832
Caci_8936
KEGG: mgi:Mflv_1133 hypothetical protein.
 
     0.594
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.462
Caci_8946
KEGG: sgr:SGR_7062t hypothetical protein.
 
     0.424
Caci_1631
SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_1330 XRE family transcriptional regulator.
  
     0.421
Caci_5189
PFAM: DSBA oxidoreductase; KEGG: saq:Sare_0436 tetratricopeptide domain- containing protein.
  
   
 0.416
Caci_8932
PFAM: NLP/P60 protein; KEGG: sco:SCO3511 lipoprotein.
       0.403
Caci_3699
Hypothetical protein; KEGG: fre:Franean1_3837 transposase IS4 family protein.
  
     0.401
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.