STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_8961PFAM: GCN5-related N-acetyltransferase; KEGG: stp:Strop_1748 GCN5-related N- acetyltransferase. (203 aa)    
Predicted Functional Partners:
Caci_8962
PFAM: amino acid permease-associated region; KEGG: saq:Sare_1731 amino acid permease-associated region.
 
     0.865
Caci_8958
PFAM: phosphoribosyltransferase; KEGG: cau:Caur_1419 xanthine phosphoribosyltransferase.
       0.658
Caci_8959
Hypothetical protein.
       0.658
Caci_8960
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV_1229 acetyltransferase.
       0.658
Caci_8963
KEGG: saq:Sare_1730 hypothetical protein.
       0.621
Caci_8964
KEGG: fra:Francci3_0395 hypothetical protein.
       0.531
Caci_6544
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sco:SCO3067 anti anti sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
     0.425
Caci_8957
Hypothetical protein.
       0.416
Caci_5846
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sco:SCO4477 MerR family transcriptional regulator.
  
     0.410
Caci_4297
PFAM: periplasmic binding protein; KEGG: saq:Sare_2741 periplasmic binding protein.
 
     0.400
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.