STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_9014PFAM: metallophosphoesterase; KEGG: sco:SCO3582 secreted protein. (327 aa)    
Predicted Functional Partners:
Caci_6782
KEGG: sco:SCO6030 hypothetical protein.
  
     0.712
Caci_9015
KEGG: sma:SAV_4582 hypothetical protein.
       0.678
Caci_6820
KEGG: sma:SAV_5784 hypothetical protein.
  
     0.674
Caci_7408
KEGG: sma:SAV_6007 integral membrane protein.
  
     0.619
Caci_1633
KEGG: ace:Acel_1404 hypothetical protein.
  
     0.613
Caci_8240
TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: tfu:Tfu_2873 hypothetical protein; Belongs to the GcvT family.
 
     0.597
Caci_0582
PFAM: glycosyl transferase family 39; KEGG: sma:SAV_3592 integral membrane protein.
  
     0.587
Caci_8729
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fal:FRAAL3176 putative lyase (cysteine synthase/cystathionine beta-synthase family protein).
     
 0.554
Caci_0202
PFAM: Septum formation initiator; KEGG: sma:SAV_3532 hypothetical protein.
 
     0.553
Caci_8080
PFAM: ResB family protein; KEGG: sgr:SGR_4198 putative cytochrome c biogenesis membrane protein.
  
     0.544
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.