STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caci_9047Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: nca:Noca_4690 aminotransferase, class I and II. (437 aa)    
Predicted Functional Partners:
Caci_6289
TIGRFAM: lysine biosynthesis enzyme LysX; alpha-L- glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: dge:Dgeo_1151 lysine biosynthesis enzyme LysX; Belongs to the RimK family.
     
  0.900
ddl-3
D-alanine/D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
   
 0.832
Caci_2376
KEGG: ace:Acel_1332 hypothetical protein.
  
     0.486
Caci_9046
Hypothetical protein; KEGG: scl:sce2330 rRNA methyltransferase, putative.
     
 0.443
Caci_9045
KEGG: kcr:Kcr_1423 hypothetical protein.
       0.420
Your Current Organism:
Catenulispora acidiphila
NCBI taxonomy Id: 479433
Other names: C. acidiphila DSM 44928, Catenulispora acidiphila DSM 44928, Catenulispora acidiphila str. DSM 44928, Catenulispora acidiphila strain DSM 44928
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.