STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_0671PFAM: beta-lactamase; KEGG: aoe:Clos_0923 beta-lactamase. (304 aa)    
Predicted Functional Partners:
Sthe_3483
N-acyl-D-amino-acid deacylase; PFAM: D-aminoacylase domain protein; amidohydrolase; Amidohydrolase 3; KEGG: geo:Geob_0285 N-acyl-D-aspartate deacylase.
 
     0.501
Sthe_2740
N-acyl-D-glutamate deacylase; PFAM: D-aminoacylase domain protein; Amidohydrolase 3; KEGG: dde:Dde_1269 N-acyl-D-amino-acid deacylase.
 
     0.500
Sthe_0672
PFAM: beta-lactamase domain protein; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: bld:BLi02785 hypothetical protein.
  
  
 0.486
Sthe_0673
PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: mgi:Mflv_0984 rhodanese domain-containing protein.
  
    0.413
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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