STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_0840KEGG: amt:Amet_0528 hypothetical protein. (275 aa)    
Predicted Functional Partners:
Sthe_2014
TIGRFAM: rod shape-determining protein MreD; KEGG: hmo:HM1_2728 rod shape-determining protein, putative.
  
     0.593
Sthe_2343
PFAM: major facilitator superfamily MFS_1; KEGG: cpo:COPRO5265_1177 transporter, major facilitator family.
  
     0.492
Sthe_0929
Hypothetical protein; KEGG: cau:Caur_1201 cell wall anchor domain- containing protein.
  
     0.489
Sthe_0839
PFAM: Antibiotic biosynthesis monooxygenase; KEGG: rha:RHA1_ro03036 hypothetical protein.
  
    0.486
Sthe_0968
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: mth:MTH1789 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.484
Sthe_0506
KEGG: hau:Haur_1454 hypothetical protein.
  
     0.457
Sthe_0284
PFAM: PRC-barrel domain protein; KEGG: dge:Dgeo_1677 PRC-barrel domain-containing protein.
  
     0.449
Sthe_0251
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ton:TON_1430 hypothetical protein.
  
     0.437
Sthe_0275
PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: ton:TON_1430 hypothetical protein.
  
     0.427
Sthe_2322
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: hau:Haur_1099 ArsR family transcriptional regulator.
  
     0.418
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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