STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_1360TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: cau:Caur_3169 DNA binding domain-containing protein. (220 aa)    
Predicted Functional Partners:
Sthe_0929
Hypothetical protein; KEGG: cau:Caur_1201 cell wall anchor domain- containing protein.
  
     0.718
Sthe_1860
KEGG: rrs:RoseRS_0243 glycosyl transferase family protein.
  
     0.718
Sthe_1973
PFAM: LmbE family protein; KEGG: cau:Caur_2341 LmbE family protein.
  
     0.707
Sthe_1693
KEGG: rrs:RoseRS_3712 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.684
Sthe_3513
KEGG: scl:sce0055 hypothetical protein.
  
     0.684
Sthe_1975
KEGG: rrs:RoseRS_2654 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.673
Sthe_1861
Membrane-bound mannosyltransferase-like protein; KEGG: hau:Haur_3865 NHL repeat-containing protein.
  
     0.658
Sthe_1776
PFAM: protein of unknown function DUF214; KEGG: cef:CE2436 putative ABC transporter permease protein.
 
     0.650
Sthe_1345
KEGG: hau:Haur_3384 hypothetical protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.644
Sthe_0484
PFAM: O-antigen polymerase; KEGG: rca:Rcas_0733 O-antigen polymerase.
  
     0.641
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.