Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Sthe_1634 | Sthe_1635 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hau:Haur_4152 HAD family hydrolase. | PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase (DraG). | 0.776 |
Sthe_1634 | Sthe_1636 | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hau:Haur_4152 HAD family hydrolase. | Hypothetical protein. | 0.463 |
Sthe_1635 | Sthe_1634 | PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase (DraG). | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hau:Haur_4152 HAD family hydrolase. | 0.776 |
Sthe_1635 | Sthe_1636 | PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase (DraG). | Hypothetical protein. | 0.463 |
Sthe_1636 | Sthe_1634 | Hypothetical protein. | TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hau:Haur_4152 HAD family hydrolase. | 0.463 |
Sthe_1636 | Sthe_1635 | Hypothetical protein. | PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase (DraG). | 0.463 |
Sthe_1636 | Sthe_1637 | Hypothetical protein. | PFAM: protein of unknown function DUF88; KEGG: amr:AM1_2313 hypothetical protein. | 0.436 |
Sthe_1637 | Sthe_1636 | PFAM: protein of unknown function DUF88; KEGG: amr:AM1_2313 hypothetical protein. | Hypothetical protein. | 0.436 |