Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sthe_1640 | Sthe_1642 | Sthe_1640 | Sthe_1642 | KEGG: ade:Adeh_3797 hypothetical protein. | PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2607 metallophosphoesterase. | 0.446 |
Sthe_1640 | mnmG | Sthe_1640 | Sthe_1641 | KEGG: ade:Adeh_3797 hypothetical protein. | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.483 |
Sthe_1642 | Sthe_1640 | Sthe_1642 | Sthe_1640 | PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2607 metallophosphoesterase. | KEGG: ade:Adeh_3797 hypothetical protein. | 0.446 |
Sthe_1642 | mnmG | Sthe_1642 | Sthe_1641 | PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2607 metallophosphoesterase. | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.707 |
mnmG | Sthe_1640 | Sthe_1641 | Sthe_1640 | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | KEGG: ade:Adeh_3797 hypothetical protein. | 0.483 |
mnmG | Sthe_1642 | Sthe_1641 | Sthe_1642 | Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | PFAM: metallophosphoesterase; KEGG: rrs:RoseRS_2607 metallophosphoesterase. | 0.707 |