STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_1663KEGG: sth:STH1622 hypothetical protein. (416 aa)    
Predicted Functional Partners:
Sthe_0930
PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; helicase domain protein; KEGG: sth:STH1623 ATP-dependent RNA helicase.
 
  
 0.856
gpmI
Phosphoglycerate mutase, 2,3-bisphosphoglycerate- independent; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
       0.689
Sthe_1662
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: cya:CYA_1467 isopropylmalate/isohomocitrate dehydrogenase family protein.
       0.543
Sthe_2767
PFAM: protein of unknown function DUF92 transmembrane; KEGG: hypothetical protein.
  
     0.495
Sthe_1665
PFAM: aminotransferase class-III; KEGG: sma:SAV_4551 hypothetical protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.420
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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