STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_3002PFAM: protein of unknown function DUF112 transmembrane; KEGG: smd:Smed_5907 hypothetical protein. (515 aa)    
Predicted Functional Partners:
Sthe_3000
PFAM: conserved hypothetical protein; KEGG: rme:Rmet_5629 hypothetical protein.
  
 0.991
Sthe_3001
Hypothetical protein; KEGG: mms:mma_0439 small permease component of tripartite tricarboxylate transporter.
       0.714
Sthe_3003
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: cti:RALTA_A2262 putative formyl-CoA transferase, CaiB/BaiF family; Belongs to the CoA-transferase III family.
  
    0.632
Sthe_0235
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: rha:RHA1_ro08622 IclR family transcriptional regulator.
 
    0.484
Sthe_3004
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: csa:Csal_3188 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.405
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.