STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sthe_3248PFAM: AzlC family protein; KEGG: pmy:Pmen_3295 AzlC family protein. (270 aa)    
Predicted Functional Partners:
Sthe_3249
PFAM: branched-chain amino acid transport; KEGG: pla:Plav_1961 branched-chain amino acid transport.
  
  
 0.960
Sthe_3250
PFAM: GCN5-related N-acetyltransferase; KEGG: mes:Meso_2109 MarR family transcriptional regulator.
       0.651
Sthe_3247
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: pfl:PFL_2446 DNA-binding protein.
       0.546
Sthe_3371
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_38080 ProX.
 
     0.414
Your Current Organism:
Sphaerobacter thermophilus
NCBI taxonomy Id: 479434
Other names: S. thermophilus DSM 20745, Sphaerobacter thermophilus DSM 20745, Sphaerobacter thermophilus str. DSM 20745, Sphaerobacter thermophilus strain DSM 20745
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.