STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_0090PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rlt:Rleg2_6172 binding-protein-dependent transport systems inner membrane component. (653 aa)    
Predicted Functional Partners:
Kfla_0089
KEGG: mxa:MXAN_2249 glycine betaine/L-proline ABC transporter, ATP-binding protein; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
 0.999
Kfla_0091
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sil:SPO1548 glycine betaine/proline ABC transporter, periplasmic substrate-binding protein.
 
 
 0.998
Kfla_6776
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: avi:Avi_0501 ABC transporter nucleotide binding/ATPase protein (proline/glycine/betaine).
 
  
 0.549
Kfla_0088
PFAM: globin; KEGG: mlo:mlr0267 hypothetical protein.
 
     0.534
Kfla_3540
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: hha:Hhal_1068 methyltransferase type 11.
  
     0.523
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.518
Kfla_6773
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: ara:Arad_8402 substrate-binding region of ABC- type glycine betaine transport system.
  
  
 0.467
Kfla_0092
KEGG: mno:Mnod_3460 cobyrinic acid ac-diamide synthase.
       0.447
Kfla_0087
PFAM: aminoglycoside/hydroxyurea antibiotic resistance kinase; KEGG: pfo:Pfl01_3891 aminoglycoside/hydroxyurea antibiotic resistance kinase.
       0.416
purM
KEGG: afw:Anae109_2512 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein.
   
    0.406
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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