STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_0527KEGG: rsq:Rsph17025_3025 hypothetical protein. (401 aa)    
Predicted Functional Partners:
Kfla_0526
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ank:AnaeK_3232 RNA polymerase, sigma-24 subunit, ECF subfamily.
       0.678
Kfla_0525
PFAM: major facilitator superfamily MFS_1; KEGG: bja:blr6921 putative multidrug resistance protein.
       0.583
Kfla_0528
PFAM: Helix-turn-helix type 11 domain protein; KEGG: pag:PLES_39461 putative transcriptional regulator.
       0.566
Kfla_6223
PFAM: protein of unknown function DUF1360.
  
     0.539
Kfla_6988
Type IV secretory pathway VirD4 protein-like protein; KEGG: avi:Avi_0680 agrobacteirum virulence protein VirD4.
 
 
 
 0.524
Kfla_6597
PFAM: GCN5-related N-acetyltransferase; KEGG: sme:SMa1660 hypothetical protein.
  
     0.484
Kfla_6916
Hypothetical protein; SNP.
  
     0.434
Kfla_2184
Type IV secretory pathway VirD4 protein-like protein; KEGG: rle:pRL100217 putative conjugal transfer protein.
   
 
 0.426
Kfla_0524
KEGG: bbt:BBta_1559 hypothetical protein.
       0.415
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.