STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_0681PFAM: LVIVD repeat protein; KEGG: mes:Meso_0173 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Kfla_0682
PFAM: protein of unknown function DUF305; KEGG: met:M446_1820 hypothetical protein.
     0.988
Kfla_1525
PFAM: protein of unknown function DUF305; KEGG: met:M446_1820 hypothetical protein.
     0.748
Kfla_3422
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: scl:sce7477 hypothetical protein.
  
     0.588
Kfla_0683
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: mlo:mlr1583 dehydrogenase/reductase.
       0.546
Kfla_0684
PFAM: DNA alkylation repair enzyme; KEGG: bba:Bd1631 hypothetical protein.
       0.546
Kfla_2465
Hypothetical protein.
 
     0.531
Kfla_0680
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: dvm:DvMF_2440 anti-sigma-factor antagonist.
       0.464
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.