STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1080Transcriptional regulator, BadM/Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: plu:plu1977 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Kfla_2779
PFAM: aminotransferase class V; KEGG: gur:Gura_1493 aminotransferase, class V.
  
  
 0.641
Kfla_4909
PFAM: aminotransferase class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sat:SYN_01251 cysteine desulfurase / selenocysteine lyase.
  
  
 0.641
Kfla_1081
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_C0813 putative short-chain dehydrogenase/reductase.
   
   0.573
Kfla_3283
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein.
  
  
 0.552
Kfla_1689
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: hch:HCH_01159 acetolactate synthase; Belongs to the TPP enzyme family.
      
 0.420
Kfla_1698
PFAM: Phytanoyl-CoA dioxygenase; KEGG: ret:RHE_CH03702 hypothetical protein.
      
 0.420
Kfla_2974
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: eba:ebA3553 ring-hydroxylation complex protein 4.
  
  
 0.400
Kfla_3839
PFAM: Oxidoreductase FAD-binding domain protein; ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: abo:ABO_1717 flavodoxin reductases (ferredoxin-NADPH reductase)putative.
  
  
 0.400
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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