STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1237PFAM: PspC domain protein; KEGG: lch:Lcho_2882 phage shock protein C, PspC. (455 aa)    
Predicted Functional Partners:
Kfla_1238
Putative signal transduction histidine kinase; PFAM: PspC domain protein; ATP-binding region ATPase domain protein; KEGG: afw:Anae109_3790 phage shock protein C, PspC.
 
    0.866
Kfla_2715
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: afr:AFE_2017 PspA/IM30 family.
  
 
 0.814
Kfla_1236
Hypothetical protein.
       0.773
Kfla_1239
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; response regulator receiver; SMART: regulatory protein LuxR; response regulator receiver; KEGG: eba:ebA6278 nitrate/nitrite response regulator.
 
  
 0.677
Kfla_4457
Multi-sensor signal transduction histidine kinase; KEGG: scl:sce0206 two-component system sensor histidine kinase/response regulator, hybrid ('one- component system'); TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region A [...]
  
 
 0.648
Kfla_6877
PFAM: membrane protein of unknown function; KEGG: vei:Veis_0393 membrane protein of unknown function.
  
    0.634
Kfla_5071
Phage shock protein C, PspC; PFAM: PspC domain protein; KEGG: xom:XOO_2087 hypothetical protein.
 
   
 0.589
Kfla_1240
Hypothetical protein.
       0.463
Kfla_1370
PFAM: peptidase S1 and S6 chymotrypsin/Hap; KEGG: mxa:MXAN_4433 S1C family peptidase.
  
  
 0.431
Kfla_5478
PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: pzu:PHZ_c1087 serine protease HtrA.
  
  
 0.431
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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