STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1382PFAM: peptidase U61 LD-carboxypeptidase A; KEGG: vch:VCA0439 microcin immunity protein MccF. (342 aa)    
Predicted Functional Partners:
Kfla_3047
D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D- alanine-endopeptidase; KEGG: pfs:PFLU1023 putative penicillin-binding exported protein; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C.
 
  
 0.601
Kfla_1383
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: neu:NE2169 generic methyltransferase.
       0.557
Kfla_6472
TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D- alanyl-D-alanine-endopeptidase; PFAM: peptidase S13 D-Ala-D-Ala carboxypeptidase C; KEGG: pfs:PFLU1023 putative penicillin-binding exported protein.
    
 0.549
Kfla_4772
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2.
     
 0.523
Kfla_2302
KEGG: bbr:BB4526 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain.
    
 0.513
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.