STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1424Acetyltransferase; KEGG: scl:sce0310 acetyltransferase. (403 aa)    
Predicted Functional Partners:
Kfla_1425
Hypothetical protein.
       0.709
Kfla_1426
Hypothetical protein.
       0.709
Kfla_1427
PFAM: ATPase associated with various cellular activities AAA_3; ATPase associated with various cellular activities AAA_5; KEGG: smt:Smal_3847 ATPase associated with various cellular activities AAA_3.
       0.627
Kfla_1428
PFAM: protein of unknown function DUF58; KEGG: hch:HCH_00266 hypothetical protein.
       0.627
Kfla_5998
PFAM: ribosomal RNA adenine methylase transferase; Methyltransferase type 11; SMART: ribosomal RNA adenine methylase transferase; KEGG: cti:RALTA_A0470 dimethyladenosine transferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
    0.611
Kfla_1423
PFAM: cobalamin synthesis CobW domain protein; KEGG: mfa:Mfla_1231 cobalamin synthesis protein, P47K.
 
     0.597
Kfla_2376
KEGG: dar:Daro_0466 competence protein ComEA helix- hairpin-helix region; TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein; PFAM: helix-hairpin-helix motif; SMART: Helix-hairpin-helix DNA-binding class 1.
  
    0.552
Kfla_1430
Hypothetical protein; KEGG: maq:Maqu_3369 sodium:neurotransmitter symporter.
       0.422
whiB-4
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.418
Kfla_6427
KEGG: hypothetical protein.
  
     0.411
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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