STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1473PFAM: helix-turn-helix HxlR type; KEGG: mno:Mnod_2385 transcriptional regulator, HxlR family. (124 aa)    
Predicted Functional Partners:
Kfla_0376
PFAM: helix-turn-helix HxlR type; KEGG: bbr:BB3851 putative transcriptional regulator.
  
     0.719
Kfla_1474
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mlo:mlr2047 short chain dehydrogenase.
 
     0.621
Kfla_1472
PFAM: Amidase; KEGG: rpt:Rpal_1900 amidase; Belongs to the amidase family.
   
   0.604
Kfla_5527
Hypothetical protein.
   
    0.503
Kfla_2153
PFAM: helix-turn-helix HxlR type; KEGG: mes:Meso_2092 transcriptional regulator, HxlR family.
  
     0.430
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.