STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1652TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: hypothetical protein. (217 aa)    
Predicted Functional Partners:
Kfla_1653
KEGG: dol:Dole_2388 hypothetical protein.
       0.773
Kfla_1651
KEGG: shw:Sputw3181_3382 hypothetical protein.
       0.668
Kfla_3961
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: mpt:Mpe_A3093 hypothetical protein.
  
     0.592
Kfla_1649
PFAM: SAF domain protein.
       0.451
Kfla_1650
Hypothetical protein; KEGG: mex:Mext_2482 putative pilus assembly protein CpaE.
       0.432
Kfla_6402
Hypothetical protein; KEGG: mxa:MXAN_5009 type I phosphodiesterase/nucleotide pyrophosphatase family protein.
  
     0.415
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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