STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1663PFAM: lipase class 2; KEGG: hypothetical protein. (300 aa)    
Predicted Functional Partners:
Kfla_1662
PFAM: regulatory protein TetR; KEGG: dol:Dole_0816 TetR family transcriptional regulator.
 
     0.772
Kfla_0025
PFAM: regulatory protein TetR; KEGG: sml:Smlt3985 putative TetR family transcriptional regulator.
  
     0.526
Kfla_6859
PFAM: regulatory protein TetR; KEGG: bvi:Bcep1808_4096 TetR family transcriptional regulator.
  
     0.481
rpmA
TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: mca:MCA2247 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.480
rplU
Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
    
   0.470
Kfla_3725
KEGG: hypothetical protein; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B.
    
   0.470
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: pzu:PHZ_c0116 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.470
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: dat:HRM2_12300 RpmB; Belongs to the bacterial ribosomal protein bL28 family.
    
   0.470
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
    
   0.470
rpsI
PFAM: ribosomal protein S9; KEGG: azc:AZC_2191 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.470
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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