STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1663PFAM: lipase class 2; KEGG: hypothetical protein. (300 aa)    
Predicted Functional Partners:
Kfla_1662
PFAM: regulatory protein TetR; KEGG: dol:Dole_0816 TetR family transcriptional regulator.
 
     0.771
Kfla_0025
PFAM: regulatory protein TetR; KEGG: sml:Smlt3985 putative TetR family transcriptional regulator.
  
     0.526
Kfla_6859
PFAM: regulatory protein TetR; KEGG: bvi:Bcep1808_4096 TetR family transcriptional regulator.
  
     0.481
rplC
Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
   
   0.430
Kfla_3746
PFAM: peptidase S15; KEGG: hch:HCH_04239 acyl esterase.
 
     0.422
Kfla_5459
PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 18 family.
  
     0.405
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.