STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1735PFAM: PfkB domain protein; KEGG: smd:Smed_4394 ribokinase-like domain- containing protein. (348 aa)    
Predicted Functional Partners:
Kfla_4763
PFAM: glycoside hydrolase family 4; KEGG: xac:XAC3081 6-phospho-beta-glucosidase.
 
     0.780
Kfla_1688
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: ccs:CCNA_01359 myo-inositol catabolism protein IolB.
 
  
 0.763
Kfla_1689
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: hch:HCH_01159 acetolactate synthase; Belongs to the TPP enzyme family.
 
  
 0.676
Kfla_5626
PFAM: extracellular solute-binding protein family 1; KEGG: rlt:Rleg2_1218 extracellular solute-binding protein family 1.
 
    0.609
Kfla_1196
PFAM: glycoside hydrolase family 4; KEGG: vpa:VP2634 6-phospho-beta-glucosidase.
 
     0.599
Kfla_1736
Hypothetical protein.
       0.542
Kfla_1737
Hypothetical protein.
       0.542
hisA
Bifunctional HisA/TrpF protein; KEGG: plu:plu0797 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: bifunctional HisA/TrpF protein; phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein.
  
  
 0.519
Kfla_1690
Myo-inosose-2 dehydratase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: avi:Avi_7455 hypothetical protein.
 
  
 0.488
Kfla_5625
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rec:RHECIAT_CH0001625 putative sugar ABC transporter, permease protein.
 
    0.469
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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