STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_1846PFAM: lipolytic protein G-D-S-L family; KEGG: bte:BTH_I3258 GDSL-like lipase/acylhydrolase domain-containing protein. (269 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.757
Kfla_1848
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
       0.757
Kfla_1849
KEGG: mlo:mlr6918 hypothetical protein.
       0.757
Kfla_1342
PFAM: glycosyl transferase group 1; KEGG: pap:PSPA7_4878 hypothetical protein.
 
     0.540
Kfla_5115
Hypothetical protein.
  
     0.530
Kfla_1845
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: hypothetical protein.
       0.519
Kfla_5219
Hypothetical protein.
  
     0.494
Kfla_6484
KEGG: prw:PsycPRwf_0069 cholesterol oxidase; Belongs to the GMC oxidoreductase family.
  
     0.460
Kfla_4430
KEGG: cvi:CV_0779 DNA-directed DNA polymerase I; PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase.
  
     0.441
Kfla_0132
Hypothetical protein; KEGG: pzu:PHZ_c0928 ATP-binding ABC transporter protein.
  
     0.434
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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