Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Kfla_1908PFAM: protein of unknown function DUF397. (77 aa)    
Predicted Functional Partners:
Kfla_1909
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
 
     0.837
Kfla_1549
Hypothetical protein.
 
   
 0.788
Kfla_1905
SMART: helix-turn-helix domain protein.
 
   
 0.788
Kfla_3404
Hypothetical protein.
 
   
 0.788
Kfla_3695
Hypothetical protein.
 
   
 0.788
Kfla_3908
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.774
Kfla_1550
PFAM: protein of unknown function DUF574; KEGG: mxa:MXAN_2293 hypothetical protein.
  
     0.773
Kfla_2525
PFAM: protein of unknown function DUF574; KEGG: mxa:MXAN_2293 hypothetical protein.
  
     0.773
Kfla_5720
PFAM: protein of unknown function DUF574; Methyltransferase type 12; Methyltransferase type 11; KEGG: mxa:MXAN_2293 hypothetical protein.
  
     0.773
Kfla_5807
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.773
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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