STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_2688PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dol:Dole_3066 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Kfla_2689
TIGRFAM: 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase; PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: sit:TM1040_3510 dihydrolipoamide succinyltransferase.
  
    0.635
Kfla_3634
PFAM: NmrA family protein; NAD-dependent epimerase/dehydratase; KEGG: dvl:Dvul_2879 NAD-dependent epimerase/dehydratase.
    0.561
Kfla_3693
KEGG: rpb:RPB_2724 hypothetical protein.
  
    0.556
arcA
Arginine deiminase; PFAM: amidinotransferase; KEGG: asa:ASA_0222 arginine deiminase.
   
    0.528
Kfla_0658
PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase; KEGG: rsp:RSP_4030 tagatose 1,6-diphosphate aldolase.
   
    0.526
Kfla_0253
KEGG: bra:BRADO4970 hypothetical protein.
  
    0.518
Kfla_4374
Hypothetical protein.
   
    0.485
Kfla_0904
PFAM: CsbD family protein; KEGG: pfo:Pfl01_4351 CsbD-like; Belongs to the UPF0337 (CsbD) family.
   
    0.482
Kfla_2690
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; glucose-inhibited division protein A; FAD dependent oxidoreductase; KEGG: mxa:MXAN_4219 alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase.
  
    0.451
Kfla_5871
Iron (metal) dependent repressor, DtxR family; PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: pca:Pcar_1950 iron repressor, putative.
   
    0.451
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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