STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_2705PFAM: ROK family protein; regulatory protein MarR; SMART: regulatory protein MarR; KEGG: mxa:MXAN_6549 ROK family transcriptional regulator. (396 aa)    
Predicted Functional Partners:
Kfla_2704
KEGG: rsh:Rsph17029_3436 periplasmic binding protein/LacI transcriptional regulator.
 
     0.596
Kfla_1462
PFAM: ROK family protein; KEGG: rlt:Rleg2_5489 ROK family protein.
  
     0.534
cobS
Cobalamin-5-phosphate synthase CobS; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.433
Kfla_2703
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bgl:bglu_2g03630 probable sugar ABC transporter, ATP-binding protein.
 
    0.414
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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