STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3068PFAM: electron transport protein SCO1/SenC; KEGG: bac:BamMC406_1038 electron transport protein SCO1/SenC. (220 aa)    
Predicted Functional Partners:
Kfla_2780
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.900
Kfla_0456
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mpt:Mpe_A1221 peroxiredoxin-like protein.
 
 
 0.823
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
       0.813
trpB
Tryptophan synthase, beta subunit; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
       0.807
Kfla_0980
KEGG: hypothetical protein.
  
 
 0.787
Kfla_6328
PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE.
  
 
 0.787
Kfla_6839
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; NHL repeat containing protein; KEGG: haloacid dehalogenase-like hydrolase family protein.
  
 
 0.787
Kfla_3709
PFAM: protein of unknown function DUF461; KEGG: mpt:Mpe_A0691 hypothetical protein.
 
   
 0.768
Kfla_3274
PFAM: cytochrome oxidase assembly; KEGG: mca:MCA1778 cytochrome oxidase assembly protein.
  
 
 0.666
trpC
PFAM: Indole-3-glycerol phosphate synthase; KEGG: ank:AnaeK_4171 indole-3-glycerol-phosphate synthase; Belongs to the TrpC family.
       0.602
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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