STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3116PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: xom:XOO_3878 chloromuconate cycloisomerase. (358 aa)    
Predicted Functional Partners:
Kfla_3115
PFAM: NLP/P60 protein; KEGG: avi:Avi_0297 hypothetical protein.
 
  
 0.884
Kfla_3117
PFAM: beta-lactamase; KEGG: rme:Rmet_4436 beta-lactamase class A-like protein.
 
     0.854
Kfla_4508
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: spl:Spea_3858 mandelate racemase/muconate lactonizing protein.
  
     0.746
cobD
Cobalamin biosynthesis protein CobD; Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.
       0.550
Kfla_3119
PFAM: Phosphoglycerate mutase; KEGG: hypothetical protein.
       0.550
Kfla_3120
KEGG: reu:Reut_A1475 hypothetical protein.
       0.550
Kfla_5128
PFAM: peptidase S58 DmpA; KEGG: scl:sce5442 aminopeptidase.
 
     0.509
Kfla_6984
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.491
Kfla_3486
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: set:SEN1436 putative dehydratase.
  
     0.487
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.