STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3209PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: amc:MADE_00921 BNR/Asp-box repeat protein. (784 aa)    
Predicted Functional Partners:
Kfla_3210
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120558 putative transmembrane transporter permease component.
 
     0.891
Kfla_3211
PFAM: extracellular solute-binding protein family 1; KEGG: scl:sce3057 sugar ABC transporter substrate- binding protein.
 
     0.876
Kfla_3212
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rpt:Rpal_0057 ABC transporter related; Belongs to the ABC transporter superfamily.
 
     0.817
Kfla_3213
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mmw:Mmwyl1_0774 binding-protein-dependent transport systems inner membrane component.
 
     0.803
Kfla_3017
Hypothetical protein; KEGG: GF18202 gene product from transcript GF18202- RA.
  
     0.651
Kfla_2107
PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bpy:Bphyt_5099 ATP-dependent transcriptional regulator, MalT-like, LuxR family.
  
     0.631
Kfla_3208
Hypothetical protein.
       0.538
Kfla_3746
PFAM: peptidase S15; KEGG: hch:HCH_04239 acyl esterase.
  
     0.538
Kfla_5722
KEGG: scl:sce2254 hypothetical protein.
  
     0.536
Kfla_2229
PFAM: GCN5-related N-acetyltransferase; KEGG: acp:A2cp1_1057 GCN5-related N- acetyltransferase.
  
    0.506
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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