STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3219Hypothetical protein; KEGG: BSM; submaxillary mucin 2. (325 aa)    
Predicted Functional Partners:
Kfla_3220
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily.
       0.773
Kfla_3221
PFAM: aminoglycoside phosphotransferase; KEGG: mxa:MXAN_0104 aminoglycoside phosphotransferase family protein.
       0.664
Kfla_3222
PFAM: NUDIX hydrolase; KEGG: csa:Csal_2826 NUDIX hydrolase.
       0.664
Kfla_3223
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: met:M446_3512 short-chain dehydrogenase/reductase SDR.
       0.655
Kfla_3224
PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein.
       0.454
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.