STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3561PFAM: aminotransferase class V; KEGG: scl:sce8911 class-V aminotransferase. (407 aa)    
Predicted Functional Partners:
Kfla_3283
TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: ade:Adeh_0847 SUF system FeS assembly protein.
 
 
 0.952
Kfla_3281
KEGG: sil:SPO2018 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase.
 
  
 0.820
Kfla_3562
PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce4550 major facilitator superfamily permease.
 
     0.803
Kfla_3278
TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: fta:FTA_1302 cysteine desulfurase activator complex subunit SufB.
 
 
 0.729
Kfla_3279
TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; KEGG: mxa:MXAN_1155 FeS assembly protein SufD.
 
 
 0.726
Kfla_3560
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: afw:Anae109_1025 GntR family transcriptional regulator.
       0.572
egtD
Methyltransferase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
  
 0.422
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.