STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3744TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: cko:CKO_00129 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily. (329 aa)    
Predicted Functional Partners:
Kfla_0405
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 0.999
Kfla_0533
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.997
Kfla_0532
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: avi:Avi_1490 dTDP-4-dehydrorhamnose 3,5- epimerase.
 
 
 0.996
Kfla_0504
TIGRFAM: TDP-4-keto-6-deoxy-D-glucose transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aminotransferase class I and II; aromatic amino acid beta- eliminating lyase/threonine aldolase; KEGG: pen:PSEEN0254 TDP-4-oxo-6-deoxy-D-glucose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.982
Kfla_0679
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: afw:Anae109_1900 NAD-dependent epimerase/dehydratase.
 
 
0.929
Kfla_1451
Nucleotide sugar dehydrogenase; KEGG: sfu:Sfum_3370 UDP-glucose/GDP-mannose dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase.
  
  
 0.897
Kfla_0496
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; Cys/Met metabolism pyridoxal-phosphate-dependent protein; KEGG: pca:Pcar_1141 pyridoxal-phosphate-dependent aminotransferase enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.864
Kfla_2727
PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: oan:Oant_1020 polysaccharide biosynthesis protein.
  
  
 0.826
Kfla_2745
Hypothetical protein; KEGG: bav:BAV2645 capsular polysaccharide biosynthesis protein.
  
  
 0.826
Kfla_3091
PFAM: polysaccharide biosynthesis protein; KEGG: oan:Oant_1020 polysaccharide biosynthesis protein.
  
  
 0.826
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.