STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3878PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rsp:RSP_3707 hypothetical protein. (459 aa)    
Predicted Functional Partners:
Kfla_3879
Hypothetical protein.
       0.762
Kfla_3877
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70 factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cak:Caul_0748 RNA polymerase sigma factor SigJ.
      0.548
Kfla_2787
PFAM: Rieske [2Fe-2S] domain protein; KEGG: vei:Veis_4950 Rieske (2Fe-2S) domain- containing protein.
  
  
 0.543
Kfla_3876
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix domain protein; KEGG: pen:PSEEN2382 Cro/CI family transcriptional regulator.
       0.494
Kfla_2788
PFAM: cytochrome c class I; KEGG: pnu:Pnuc_0456 cytochrome c oxidase, cbb3- type, subunit III.
  
   
 0.465
gpmA
Phosphoglycerate mutase 1 family; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
    
   0.445
Kfla_5184
TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: Transketolase central region; dehydrogenase E1 component; catalytic domain of components of various dehydrogenase complexes; KEGG: bpt:Bpet1832 2-oxoglutarate dehydrogenase E1 component.
  
  
 0.425
Kfla_3880
Superfamily I DNA and RNA helicase-like protein; KEGG: aeh:Mlg_1110 hypothetical protein.
       0.417
Kfla_3074
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: acp:A2cp1_0869 glutamate synthase (ferredoxin).
     
 0.407
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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