STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3923PFAM: YCII-related; KEGG: ccs:CCNA_00394 cytosolic protein. (126 aa)    
Predicted Functional Partners:
Kfla_3922
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: ret:RHE_CH01322 putative RNA polymerase sigma factor protein (sigma-70).
 
     0.904
Kfla_3550
PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.
  
     0.771
Kfla_3164
PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.
  
     0.769
Kfla_1308
PFAM: YCII-related; KEGG: psa:PST_0149 hypothetical protein.
  
     0.768
Kfla_3869
PFAM: YCII-related; KEGG: bra:BRADO5671 hypothetical protein.
  
     0.766
Kfla_0245
PFAM: YCII-related; KEGG: psa:PST_0149 hypothetical protein.
  
     0.751
Kfla_4288
PFAM: YCII-related; KEGG: kpn:KPN_pKPN5p08203 integrase.
  
     0.728
Kfla_5790
PFAM: YCII-related; KEGG: mlo:mlr4612 hypothetical protein.
  
     0.727
Kfla_2785
PFAM: YCII-related; KEGG: ara:Arad_1539 hypothetical protein.
  
     0.643
Kfla_6235
PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein.
  
     0.632
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.