STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_3968KEGG: met:M446_4604 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Kfla_3967
PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: atc:AGR_L_236 hypothetical protein slr1343.
       0.773
Kfla_4483
PFAM: Radical SAM domain protein; KEGG: mex:Mext_2717 radical SAM domain-containing protein.
 
     0.633
Kfla_3969
PFAM: glycoside hydrolase 15-related; KEGG: scl:sce1562 glycosyl hydrolase.
       0.529
Kfla_3970
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce1528 glucose 1-dehydrogenase.
       0.529
Kfla_1930
KEGG: mpo:Mpop_0642 putative DNA-binding protein.
  
     0.512
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.
       0.495
Kfla_3950
PFAM: Radical SAM domain protein; KEGG: mch:Mchl_3457 radical SAM domain-containing protein.
 
     0.466
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.