STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_4131PFAM: Enoyl-CoA hydratase/isomerase; KEGG: HADHA; hydroxyacyl-Coenzyme A dehydrogenase/3- ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit; K07510 long-chain 3-hydroxyacyl-CoA dehydrogenase. (229 aa)    
Predicted Functional Partners:
Kfla_4130
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: atc:AGR_C_562 enoyl-CoA hydratase.
 
  
 0.990
Kfla_4132
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; chalcone and stilbene synthase domain protein; KEGG: ade:Adeh_0387 chalcone/stilbene synthase-like.
 
 0.983
Kfla_4133
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: bch:Bcen2424_0177 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  
 0.959
Kfla_4129
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: plu:plu1105 hypothetical protein.
  
    0.792
rpsG
Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
 
   0.680
rpsI
PFAM: ribosomal protein S9; KEGG: azc:AZC_2191 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.658
rpsP
TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: pzu:PHZ_c0116 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
   0.656
rpsE
Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.654
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
 
 0.653
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: scl:sce7940 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
    
   0.653
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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