STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_4241Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; KEGG: sme:SMa1789 CyaI4 adenylate/guanylate cyclase. (1148 aa)    
Predicted Functional Partners:
Kfla_4457
Multi-sensor signal transduction histidine kinase; KEGG: scl:sce0206 two-component system sensor histidine kinase/response regulator, hybrid ('one- component system'); TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; response regulator receiver; PAS fold domain protein; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; protein phosphatase 2C domain protein; PAC repeat-containing protein; histidine kinase A domain protein; PAS domain containing protein; ATP-binding region A [...]
  
 
 0.652
Kfla_0067
PFAM: transcriptional regulator TrmB; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: afw:Anae109_0915 two component LuxR family transcriptional regulator.
 
 
 0.510
Kfla_0549
PFAM: transcriptional regulator TrmB; regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_0902 two component transcriptional regulator, LuxR family.
 
 
 0.450
Kfla_5380
Protein serine phosphatase with GAF(s) sensor(s); PFAM: Stage II sporulation E family protein; GAF domain protein; ATP-binding region ATPase domain protein; SMART: protein phosphatase 2C domain protein; GAF domain protein; KEGG: rlt:Rleg2_5205 multi-sensor hybrid histidine kinase.
 
 
 0.442
Kfla_6728
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.
 
  
 0.426
Kfla_1331
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: met:M446_5885 adenylate/guanylate cyclase.
 
 
0.400
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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