STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_4482PFAM: TAP domain protein; alpha/beta hydrolase fold; KEGG: sde:Sde_0644 hypothetical protein. (502 aa)    
Predicted Functional Partners:
Kfla_6542
PFAM: TAP domain protein; KEGG: hypothetical protein.
  
     0.709
Kfla_4480
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: response regulator receiver; regulatory protein LuxR; KEGG: scl:sce5431 two-component system response regulator.
       0.618
Kfla_4481
PFAM: histidine kinase dimerisation and phosphoacceptor region; ATP-binding region ATPase domain protein; KEGG: scl:sce5432 putative two-component system sensor kinase.
       0.618
Kfla_4419
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: atc:AGR_pAT_269 hypothetical protein.
  
     0.539
Kfla_4483
PFAM: Radical SAM domain protein; KEGG: mex:Mext_2717 radical SAM domain-containing protein.
       0.484
Kfla_0810
PFAM: histidine kinase dimerisation and phosphoacceptor region; KEGG: xcv:XCV4087 two-component system sensor kinase.
  
     0.458
Kfla_3916
KEGG: hypothetical protein.
  
     0.455
Kfla_4486
PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: pau:PA14_39660 hypothetical protein.
 
     0.441
Kfla_1119
PFAM: Erythromycin esterase; KEGG: mes:Meso_3528 erythromycin esterase.
  
    0.415
Kfla_4162
KEGG: scl:sce9049 hypothetical protein.
  
     0.414
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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