STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_4563Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: bpd:BURPS668_A3029 HpcH/HpaI aldolase/citrate lyase family protein; Belongs to the HpcH/HpaI aldolase family. (275 aa)    
Predicted Functional Partners:
Kfla_5401
Citrate (pro-3S)-lyase; PFAM: HpcH/HpaI aldolase; KEGG: sil:SPO1565 citrate lyase, putative; Belongs to the HpcH/HpaI aldolase family.
  
  
 
0.926
Kfla_4564
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bte:BTH_II2227 CaiB/BaiF family protein; Belongs to the CoA-transferase III family.
 
  
 0.813
Kfla_4567
PFAM: ADP-ribosylation/Crystallin J1; KEGG: oan:Oant_4445 ADP-ribosylation/crystallin J1; SNP.
 
     0.798
Kfla_4565
Conserved hypothetical protein; KEGG: scl:sce5487 protein kinase.
 
     0.790
Kfla_5026
KEGG: pla:Plav_1625 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein.
 
  
 0.691
rbsK-2
PfkB domain protein; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
     
 0.682
Kfla_5592
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.611
Kfla_5390
PFAM: MaoC domain protein dehydratase; KEGG: pat:Patl_2716 MaoC-like dehydratase.
 
  
 0.573
Kfla_4568
Hypothetical protein.
       0.492
Kfla_1405
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: avi:Avi_5845 biotin carboxylase.
  
  
 0.460
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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