STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_4967KEGG: ret:RHE_PC00178 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Kfla_4968
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein; K01706 glucarate dehydratase.
 
     0.949
Kfla_4971
PFAM: extracellular solute-binding protein family 1; KEGG: yen:YE0460 putative sugar binding protein.
 
     0.926
Kfla_4972
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: vei:Veis_1238 NAD-dependent epimerase/dehydratase.
 
    0.898
Kfla_4970
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ypg:YpAngola_A4017 carbohydrate ABC transporter permease.
 
     0.864
Kfla_4969
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE0462 sugar transport system, permease protein.
 
     0.848
Kfla_4973
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bid:Bind_3440 IclR family transcriptional regulator.
 
     0.650
Kfla_4243
KEGG: cja:CJA_3692 hypothetical protein.
  
     0.648
Kfla_4293
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein.
  
     0.560
Kfla_4242
Hypothetical protein; KEGG: GOX4; glyoxal or galactose oxidase.
  
     0.555
Kfla_2391
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_4522 hypothetical protein.
  
     0.537
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.