Kfla_5075 protein (Kribbella flavida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Kfla_5075

Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily. (421 aa)

Predicted Functional Partners:

Kfla_5076

0.922

Kfla_4288

0.780

Kfla_4959

0.775

Kfla_0248

0.774

Kfla_3869

0.772

Kfla_3750

0.750

Kfla_5830

0.750

Kfla_3164

0.749

Kfla_6235

0.721

Kfla_3550

0.717

Your Current Organism:

Kribbella flavida

NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Kfla_0248	Kfla_5075	PFAM: YCII-related; KEGG: swd:Swoo_0824 DGPFAETKE family protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.774
Kfla_3164	Kfla_5075	PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.749
Kfla_3164	Kfla_6235	PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein.	0.757
Kfla_3550	Kfla_3750	PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.	PFAM: YCII-related; KEGG: pzu:PHZ_c0570 hypothetical protein.	0.743
Kfla_3550	Kfla_5075	PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.717
Kfla_3550	Kfla_6235	PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein.	0.697
Kfla_3750	Kfla_3550	PFAM: YCII-related; KEGG: pzu:PHZ_c0570 hypothetical protein.	PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.	0.743
Kfla_3750	Kfla_5075	PFAM: YCII-related; KEGG: pzu:PHZ_c0570 hypothetical protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.750
Kfla_3750	Kfla_6235	PFAM: YCII-related; KEGG: pzu:PHZ_c0570 hypothetical protein.	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein.	0.717
Kfla_3869	Kfla_5075	PFAM: YCII-related; KEGG: bra:BRADO5671 hypothetical protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.772
Kfla_3869	Kfla_6235	PFAM: YCII-related; KEGG: bra:BRADO5671 hypothetical protein.	PFAM: YCII-related; KEGG: rec:RHECIAT_CH0003754 hypothetical protein.	0.745
Kfla_4288	Kfla_5075	PFAM: YCII-related; KEGG: kpn:KPN_pKPN5p08203 integrase.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.780
Kfla_4959	Kfla_5075	PFAM: YCII-related; KEGG: bja:bll6613 hypothetical protein.	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	0.775
Kfla_5075	Kfla_0248	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: swd:Swoo_0824 DGPFAETKE family protein.	0.774
Kfla_5075	Kfla_3164	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: mxa:MXAN_0680 DGPF domain-containing protein.	0.749
Kfla_5075	Kfla_3550	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: bph:Bphy_6406 DGPFAETKE family protein.	0.717
Kfla_5075	Kfla_3750	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: pzu:PHZ_c0570 hypothetical protein.	0.750
Kfla_5075	Kfla_3869	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: bra:BRADO5671 hypothetical protein.	0.772
Kfla_5075	Kfla_4288	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: kpn:KPN_pKPN5p08203 integrase.	0.780
Kfla_5075	Kfla_4959	Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.	PFAM: YCII-related; KEGG: bja:bll6613 hypothetical protein.	0.775

page 1 of 2

Server load: low (26%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About