STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Kfla_5280PFAM: Laminin G sub domain 2; SMART: LamG domain protein jellyroll fold domain protein; KEGG: spl:Spea_1515 exo-alpha-sialidase. (604 aa)    
Predicted Functional Partners:
Kfla_0127
Exo-alpha-sialidase; KEGG: pha:PSHAb0159 putative sialidase.
 
  
 
0.922
Kfla_1515
PFAM: glycoside hydrolase clan GH-D; KEGG: vco:VC0395_A1295 putative alpha-1,6- galactosidase.
     
  0.900
Kfla_1749
PFAM: glycoside hydrolase clan GH-D; KEGG: tau:Tola_2117 glycoside hydrolase clan GH-D.
     
  0.900
Kfla_1996
PFAM: glycoside hydrolase clan GH-D; KEGG: esa:ESA_03854 hypothetical protein.
     
  0.900
Kfla_4308
KEGG: hypothetical protein.
     
  0.900
Kfla_3337
PFAM: type III restriction protein res subunit; helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicase; helicase domain protein; KEGG: xau:Xaut_2984 type III restriction protein res subunit.
  
    0.605
Kfla_1817
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: ypb:YPTS_3219 glycoside hydrolase family 42 protein.
  
 0.566
Kfla_1831
Beta-galactosidase; PFAM: Glycoside hydrolase family 42 domain protein; Beta-galactosidase trimerisation domain protein; Beta-galactosidase domain protein; KEGG: yps:YPTB3097 putative beta-galactosidase.
  
 0.566
Kfla_2129
Beta-galactosidase; PFAM: glycoside hydrolase family 35; Glycoside hydrolase family 42 domain protein; KEGG: xcb:XC_1214 beta-galactosidase.
  
 0.566
Kfla_4630
KEGG: mes:Meso_4442 hypothetical protein.
  
 0.566
Your Current Organism:
Kribbella flavida
NCBI taxonomy Id: 479435
Other names: K. flavida DSM 17836, Kribbella flavida DSM 17836, Kribbella flavida str. DSM 17836, Kribbella flavida strain DSM 17836
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.